Modules

This page gives an overview of all pybioportal modules and functions available. Each module refers to a specific data type as documented in cBioPortal Web Public API.

A convention is adopted in function naming, in accordance with the cBioPortal API specification, to make clear the type of GET or POST request made by naming functions with the prefixes get or fetch respectively.

• Cancer Types
  • get_all_cancer_types()
  • get_cancer_type()
  • Examples
• Clinical Attributes
  • fetch_clinical_attributes()
  • get_all_clinical_attributes()
  • get_all_clinical_attributes_in_study()
  • get_clinical_attribute_in_study()
  • Examples
• Clinical Data
  • fetch_all_clinical_data_in_study()
  • fetch_clinical_data()
  • get_all_clinical_data_in_study()
  • get_all_clinical_data_of_patient_in_study()
  • get_all_clinical_data_of_sample_in_study()
  • Examples
• Copy Number Segment
  • fetch_copy_number_segments()
  • get_copy_number_segments_in_sample_in_study()
  • Examples
• Discrete Copy Number Alterations
  • fetch_discrete_copy_numbers_in_molecular_profile()
  • get_discrete_copy_numbers_in_molecular_profile()
  • Examples
• Gene Panel Data
  • fetch_gene_panel_data()
  • fetch_gene_panel_data_in_molecular_profile()
  • Examples
• Gene Panels
  • fetch_gene_panels()
  • get_all_gene_panels()
  • get_gene_panel()
  • Examples
• Generic Assay Data
  • fetch_generic_assay_data()
  • fetch_generic_assay_data_in_molecular_profile()
  • get_generic_assay_data_in_molecular_profile()
  • Examples
• Generic Assays
  • fetch_generic_assay_meta()
  • get_generic_assay_meta_by_id()
  • get_generic_assay_meta_by_molecular_profile_id()
  • Examples
• Genes
  • fetch_genes()
  • get_aliases_of_gene()
  • get_all_genes()
  • get_gene()
  • Examples
• Info
  • get_info()
  • Examples
• Molecular Data
  • fetch_all_molecular_data_in_molecular_profile()
  • fetch_molecular_data()
  • get_all_molecular_data_in_molecular_profile()
  • Examples
• Molecular Profiles
  • fetch_molecular_profiles()
  • get_all_molecular_profiles()
  • get_all_molecular_profiles_in_study()
  • get_molecular_profile()
  • Examples
• Mutations
  • fetch_muts_in_mol_prof()
  • fetch_muts_in_multiple_mol_profs()
  • get_muts_in_mol_prof_by_sample_list_id()
  • Examples
• Patients
  • fetch_patients()
  • get_all_patients()
  • get_all_patients_in_study()
  • get_patient_in_study()
  • Examples
• Sample Lists
  • fetch_sample_lists()
  • get_all_sample_ids_in_sample_list()
  • get_all_sample_lists()
  • get_all_sample_lists_in_study()
  • get_sample_list()
  • Examples
• Samples
  • fetch_samples()
  • get_all_samples_in_study()
  • get_all_samples_of_patient_in_study()
  • get_sample_in_study()
  • get_samples_by_keyword()
  • Examples
• Server running status
  • get_server_status()
  • Examples
• Studies
  • fetch_studies()
  • fetch_tags_for_studies()
  • get_all_studies()
  • get_study()
  • get_tags_of_study()
  • Examples
• Treatments
  • fetch_all_patient_level_treatments()
  • fetch_all_sample_level_treatments()
  • fetch_status_display_patient_trts()
  • fetch_status_display_sample_trts()
  • Examples