Index

F

fetch_all_clinical_data_in_study() (in module pybioportal.clinical_data) fetch_all_molecular_data_in_molecular_profile() (in module pybioportal.molecular_data) fetch_all_patient_level_treatments() (in module pybioportal.treatments) fetch_all_sample_level_treatments() (in module pybioportal.treatments) fetch_clinical_attributes() (in module pybioportal.clinical_attributes) fetch_clinical_data() (in module pybioportal.clinical_data) fetch_copy_number_segments() (in module pybioportal.copy_number_segment) fetch_discrete_copy_numbers_in_molecular_profile() (in module pybioportal.discrete_copy_number_alterations) fetch_gene_panel_data() (in module pybioportal.gene_panel_data) fetch_gene_panel_data_in_molecular_profile() (in module pybioportal.gene_panel_data) fetch_gene_panels() (in module pybioportal.gene_panels) fetch_generic_assay_data() (in module pybioportal.generic_assay_data) fetch_generic_assay_data_in_molecular_profile() (in module pybioportal.generic_assay_data)

fetch_generic_assay_meta() (in module pybioportal.generic_assays) fetch_genes() (in module pybioportal.genes) fetch_molecular_data() (in module pybioportal.molecular_data) fetch_molecular_profiles() (in module pybioportal.molecular_profiles) fetch_muts_in_mol_prof() (in module pybioportal.mutations) fetch_muts_in_multiple_mol_profs() (in module pybioportal.mutations) fetch_patients() (in module pybioportal.patients) fetch_sample_lists() (in module pybioportal.sample_lists) fetch_samples() (in module pybioportal.samples) fetch_status_display_patient_trts() (in module pybioportal.treatments) fetch_status_display_sample_trts() (in module pybioportal.treatments) fetch_studies() (in module pybioportal.studies) fetch_tags_for_studies() (in module pybioportal.studies)

G

get_aliases_of_gene() (in module pybioportal.genes) get_all_cancer_types() (in module pybioportal.cancer_types) get_all_clinical_attributes() (in module pybioportal.clinical_attributes) get_all_clinical_attributes_in_study() (in module pybioportal.clinical_attributes) get_all_clinical_data_in_study() (in module pybioportal.clinical_data) get_all_clinical_data_of_patient_in_study() (in module pybioportal.clinical_data) get_all_clinical_data_of_sample_in_study() (in module pybioportal.clinical_data) get_all_gene_panels() (in module pybioportal.gene_panels) get_all_genes() (in module pybioportal.genes) get_all_molecular_data_in_molecular_profile() (in module pybioportal.molecular_data) get_all_molecular_profiles() (in module pybioportal.molecular_profiles) get_all_molecular_profiles_in_study() (in module pybioportal.molecular_profiles) get_all_patients() (in module pybioportal.patients) get_all_patients_in_study() (in module pybioportal.patients) get_all_sample_ids_in_sample_list() (in module pybioportal.sample_lists) get_all_sample_lists() (in module pybioportal.sample_lists) get_all_sample_lists_in_study() (in module pybioportal.sample_lists) get_all_samples_in_study() (in module pybioportal.samples) get_all_samples_of_patient_in_study() (in module pybioportal.samples)

get_all_studies() (in module pybioportal.studies) get_cancer_type() (in module pybioportal.cancer_types) get_clinical_attribute_in_study() (in module pybioportal.clinical_attributes) get_copy_number_segments_in_sample_in_study() (in module pybioportal.copy_number_segment) get_discrete_copy_numbers_in_molecular_profile() (in module pybioportal.discrete_copy_number_alterations) get_gene() (in module pybioportal.genes) get_gene_panel() (in module pybioportal.gene_panels) get_generic_assay_data_in_molecular_profile() (in module pybioportal.generic_assay_data) get_generic_assay_meta_by_id() (in module pybioportal.generic_assays) get_generic_assay_meta_by_molecular_profile_id() (in module pybioportal.generic_assays) get_info() (in module pybioportal.info) get_molecular_profile() (in module pybioportal.molecular_profiles) get_muts_in_mol_prof_by_sample_list_id() (in module pybioportal.mutations) get_patient_in_study() (in module pybioportal.patients) get_sample_in_study() (in module pybioportal.samples) get_sample_list() (in module pybioportal.sample_lists) get_samples_by_keyword() (in module pybioportal.samples) get_server_status() (in module pybioportal.server_running_status) get_study() (in module pybioportal.studies) get_tags_of_study() (in module pybioportal.studies)

M

module pybioportal.cancer_types pybioportal.clinical_attributes pybioportal.clinical_data pybioportal.copy_number_segment pybioportal.discrete_copy_number_alterations pybioportal.gene_panel_data pybioportal.gene_panels pybioportal.generic_assay_data pybioportal.generic_assays pybioportal.genes pybioportal.info pybioportal.molecular_data pybioportal.molecular_profiles pybioportal.mutations pybioportal.patients pybioportal.sample_lists pybioportal.samples pybioportal.server_running_status pybioportal.studies pybioportal.treatments

P

pybioportal.cancer_types module pybioportal.clinical_attributes module pybioportal.clinical_data module pybioportal.copy_number_segment module pybioportal.discrete_copy_number_alterations module pybioportal.gene_panel_data module pybioportal.gene_panels module pybioportal.generic_assay_data module pybioportal.generic_assays module pybioportal.genes module

pybioportal.info module pybioportal.molecular_data module pybioportal.molecular_profiles module pybioportal.mutations module pybioportal.patients module pybioportal.sample_lists module pybioportal.samples module pybioportal.server_running_status module pybioportal.studies module pybioportal.treatments module